PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G002200.1.p
Common NameSETIT_005134mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 182aa    MW: 19478.1 Da    PI: 9.8918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G002200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.5e-31141151100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleq 89 
                         aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ +++ ++  r++a+++l++eA++r rdP +G+++ +  l+++ + 
  Seita.5G002200.1.p  14 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIIKANATDaaRRRAAETLTWEARWRERDPAEGCYREVACLRRDNAL 104
                         7*******************************************99887544435************************************ PP

              DUF260  90 lkaelallkee 100
                         l+a+ a+l+++
  Seita.5G002200.1.p 105 LRADNAALRRQ 115
                         ***99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.39213116IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-2714111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTGGGNGGGG GGGACAVCKH QRRKCEPNCE LAAYFPAHRM NDFRALHLVF GVANLTKLII  60
KANATDAARR RAAETLTWEA RWRERDPAEG CYREVACLRR DNALLRADNA ALRRQLADHH  120
HLLLCWSSTT NNMAAGGGNG QLVAVRPPPP SHAPAPPPAA AAMRDHPSIS SRDNKSSNPR  180
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-16101167111LOB family transfactor Ramosa2.1
5ly0_B2e-16101167111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G002200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9705233e-97EU970523.1 Zea mays clone 346868 ramosa 2 mRNA, complete cds.
GenBankEU9732223e-97EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967330.11e-130LOB domain-containing protein 15
TrEMBLA0A368R0081e-129A0A368R008_SETIT; Uncharacterized protein
STRINGSi005134m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-15LOB domain-containing protein 2