PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G273600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 586aa    MW: 63914.5 Da    PI: 4.8161
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G273600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.12.2e-19103159355
             G2-like   3 rlrWtpeLHerFveaveqLGGsek....AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         r++Wt +LHe+F++a+e LG + +    A P  il+lm+vkgLt +++ SHLQk+Rl
  Seita.4G273600.1.p 103 RVKWTIDLHEKFLDAIEVLGDKTVrvtdAKPEGILKLMNVKGLTSKQISSHLQKHRL 159
                         99*****************87643333399**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-19100161IPR009057Homeodomain-like
SuperFamilySSF466898.96E-13102163IPR009057Homeodomain-like
PfamPF002494.0E-6103158IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.4E-15103159IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGAYDDEEAI SEHVALGACS HVLKPLHAGS LNILKQKALE HKFKKATPQG PISSRTQSRM  60
VSSFTKRPQE MLVLDRNDLP NPGSNEFEVP KVRKARGSEK PGRVKWTIDL HEKFLDAIEV  120
LGDKTVRVTD AKPEGILKLM NVKGLTSKQI SSHLQKHRLL QRNAKQGGQH QRNASRKPVS  180
ELIGSAHNAA TTESITPTVD ADSREVYPSR LWTQVKEAAV LKTCMYTCAS GIYRGDRKSV  240
WDEYEKDLQK DFSTSSRRWQ QIGVPLSKCQ LPVKNNVVID AGVSSEALKA AGEIGYGASI  300
ESSDSSSLSA GLVDQVGENN RTKAAGINDN VGNINLLEGT MNKEHTAASD PSDLFAFLQS  360
NNVDLLGPPY GREEDTPYWM SQPLEGLQNQ QNLGLEDPLQ VDDAWNKGLA SLNLINIDGP  420
MTQEATVQNA PQEATIQNDP VNNPVMPIAQ DDGLSLVQQY LGLEDLLQVD NAWNKGLASP  480
SVVNIDGPMA QEGTIQNPPA HNPEKPIAQD DGFSQDQQNL GLEDLLQVDN EWNKGLASPS  540
VINIDGPMAQ AGTIQNPPAH NPVKPTAQDD EFWSWSPLGD FDMLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G273600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681535.10.0uncharacterized protein LOC101775816 isoform X1
TrEMBLA0A368QYW00.0A0A368QYW0_SETIT; Uncharacterized protein
STRINGSi006714m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-12response regulator 1