PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G266800.1.p
Common NameLOC101771222, SETIT_006824mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 343aa    MW: 37091.7 Da    PI: 7.3233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G266800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28.1e-1381125147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Seita.4G266800.1.p  81 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 125
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1675131IPR009057Homeodomain-like
PROSITE profilePS5129414.62876130IPR017930Myb domain
TIGRFAMsTIGR015571.3E-1879128IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.3E-680121IPR009057Homeodomain-like
SMARTSM007172.7E-1080128IPR001005SANT/Myb domain
PfamPF002491.3E-1081125IPR001005SANT/Myb domain
CDDcd001678.84E-883126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVSMSTTPKP LDSAAANAAA VVAGGDDGEG GGGKQQQQQR MQGAAAVMAP PPMAVPALAP  60
APAAGEEVRK VRKPYTITKS RESWTEPEHD KFLEALQLFD RDWKKIEAYV GSKTVIQIRS  120
HAQKYFLKVQ KNGTGEHLPP PRPKRKAAHP YPQKASKNVS QAVLSQQLSP RREQGSVMSM  180
DTSTAVRNAN ANAAVPSWDN TLVQPFSASH VQGAVATNNC SSSIESPSGT WPTSEAVEQE  240
NVVPPLRAMP DFARVYSFLG SIFDPDTSGH LQRLKAMDPI DVETVLLLMR NLSTNLTSPD  300
FEEHRKLLSS YSYGSDDHIK SEGMDNLGSP QSCHLPFMVT SE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G266800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966305.10.0protein REVEILLE 6
SwissprotQ8H0W34e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLK3XY160.0K3XY16_SETIT; Uncharacterized protein
STRINGSi006824m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-84MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]