![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.4G262300.1.p | ||||||||
Common Name | LOC101765679, SETIT_005802mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 914aa MW: 100746 Da PI: 6.3493 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2.1e-24 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Seita.4G262300.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 221 99*****************************96666675.9************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ Seita.4G262300.1.p 222 WNDNNQLLLGIRRA 235 7777788***9997 PP | |||||||
2 | Auxin_resp | 120.1 | 1.7e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Seita.4G262300.1.p 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 343 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-48 | 119 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-43 | 125 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.39E-23 | 133 | 234 | No hit | No description |
Pfam | PF02362 | 6.5E-23 | 134 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-25 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-34 | 260 | 343 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-8 | 777 | 866 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.918 | 780 | 864 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.56E-7 | 780 | 856 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 914 aa Download sequence Send to blast |
MRLSSSSGSV LPAQAGSPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV 60 AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLN PQELKDPYLP 120 AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP CQELIAKDLH 180 GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRASRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD SVRWPNSHWR SVKVGWDEST AGERQPRVSL 360 WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT NSLMWLRDTA NPGFQSLNFG 420 GLGVNPWMQP RLDASLLGLQ PDMYQAMATA AFQDPTKQVS PTILQFQQPQ NIAGRAAPLL 480 SSQILQQVQP QFQQQPYLQN ISESTIHGQG QAELLKQQIQ RSHSFNEQKP QLQPQQQQQE 540 SQQQSQCLQV PQHQQMQQQN NMTNYQSVSN ALSAFSQLSS APQSSPVALQ TILPFSQAQS 600 FAETNMSSLS PSNATAMQNT LRPFSAEAAS QLSMPRPTAV PVADPWSSKR VAVESLLPSR 660 PQVTSQMEQL NSAPPSIPQS SALAPLPGRG CLDQDVNSDP QNHLLFGVSI DSQSLLMQGG 720 IPGLQNGNDS TAIPYSTSNF LSPSQNDFSL DHTLNSSGCL DDAGYVPCSD NSDQVNRLPA 780 TFVKVYKSGT YGRSLDITRF SSYHELRREL GRLFGLEGQL EDPMRSGWQL VFVDREEDVL 840 LVGDDPWQEF VSTVSCIKIL SPQEVQQMGK QGLELLSSAA PARRLGSSCD DYVSRQESRS 900 LSTGIASVGS VEF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 10 | 364 | 39 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.4G262300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT088318 | 0.0 | BT088318.1 Zea mays full-length cDNA clone ZM_BFc0133F15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966207.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_022681706.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | K3XV55 | 0.0 | K3XV55_SETIT; Auxin response factor | ||||
STRING | Si005802m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.4G262300.1.p |
Entrez Gene | 101765679 |
Publications ? help Back to Top | |||
---|---|---|---|
|