PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G257800.1.p
Common NameLOC101784034, SETIT_005991mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 687aa    MW: 74697 Da    PI: 7.4423
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G257800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-24124225199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ 
  Seita.4G257800.1.p 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM- 211
                         89****************************996555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +++++ l+v+++r+
  Seita.4G257800.1.p 212 -RTENGDLCVGIRRA 225
                         .4588999****997 PP
2Auxin_resp1156.7e-38282364283
          Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         ++ a ++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Seita.4G257800.1.p 282 SKLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 364
                         6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-37117229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-29119226IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-21123224No hitNo description
SMARTSM010193.4E-21124226IPR003340B3 DNA binding domain
PfamPF023622.3E-22124225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999124226IPR003340B3 DNA binding domain
PfamPF065077.9E-33281364IPR010525Auxin response factor
PROSITE profilePS5174520.672599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MITFVDSAAM ERERESDKCM DPQLWHACAG GMVQMPAVHS KVYYFPQGHA EHAQGPVELP  60
AGQVPALVLC RVAAVRFMAD PDTDEVFAKI RLAPVRPNES GYAADAEDAI GAAAGGQEDK  120
PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY  180
RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFLHQPP  240
PPGGNYGGFS MFLRGDEDGN KMMATRGKVR VRVRPEEVVE ASKLAVSGQP FEVVYYPRAS  300
TPEFCVKAGA VRAAMRTQWC AGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW  360
RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP PRKKLCVPLY PELPLEGQFP  420
TPMFHGSPLG RGVGPMCYFP DGTPAGIQGA RHAQFGISLS DLHLNKLQSS LSPHGLHHLD  480
HGMQPRIAAG LIIGHPAARD DISCLLTIGT PQNKKSDVKK APPQLMLFGK PILTEQQISL  540
GTGGGFPLST PKRSPSDDNA EKTVSNSDIS SPGSNQDGTS SGGAPSCQDN KVLDLGLETG  600
HCKVFMQSED VGRTLDLSDV GSYEELYQRL ADMFGIEKAE LMSHVFYRDA SGALKHTGDK  660
PFSEFTKTTR RLTILTDTAS SDSLAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-792038551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G257800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045340.0HM004534.1 Zea mays auxin response factor 19 (ARF19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966255.10.0auxin response factor 18
RefseqXP_004966256.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK3XVN30.0K3XVN3_SETIT; Auxin response factor
STRINGSi005991m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]