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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.4G250400.1.p |
| Common Name | SETIT_008399mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 168aa MW: 19098.1 Da PI: 9.6629 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.4G250400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.2 | 9.3e-06 | 103 | 126 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k + C +f++ G+C Gd C+ H+
Seita.4G250400.1.p 103 KAPVCEDFLK-GYCADGDECHKKHS 126
6689******.*********97776 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.023 | 19 | 47 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.225 | 19 | 48 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 13 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 6.859 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0042 | 74 | 99 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.864 | 74 | 100 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.29E-5 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.8E-5 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.272 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.6 | 128 | 150 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 6.972 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MLASEKVRWS LHTVRTRLAK KQQYCQFFTR FGECKKSGGK CPYIHDRAKV AICTKFLKGL 60
CSNTSCKLTH KVLPERMPDC SYFLRGLCTN TACPYRHVKV NSKAPVCEDF LKGYCADGDE 120
CHKKHSYVCP VFEATGECPQ ESRCNLHHPK KKNKSKRSRA DTLQNNS*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6dnh_C | 5e-14 | 25 | 150 | 42 | 169 | Cleavage and polyadenylation specificity factor subunit 4 |
| 6fbs_C | 3e-14 | 25 | 150 | 41 | 168 | Cleavage and polyadenylation specificity factor subunit 4 |
| 6fuw_C | 3e-14 | 25 | 150 | 41 | 168 | Cleavage and polyadenylation specificity factor subunit 4 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
