PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G239300.1.p
Common NameLOC101783370, SETIT_006358mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 473aa    MW: 50204.6 Da    PI: 7.1318
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G239300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-094074451854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  Seita.4G239300.1.p 407 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 445
                         57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.4E-14208338IPR006563POX domain
PROSITE profilePS5007111.953386449IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-26388462IPR009057Homeodomain-like
CDDcd000865.84E-12389450No hitNo description
SuperFamilySSF466895.13E-16389458IPR009057Homeodomain-like
SMARTSM003891.6E-7389453IPR001356Homeobox domain
PfamPF059206.1E-16406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MTGDASYQQL GVDATMMSGC FGSGGGGGAP VFHDGSLFGF GEPADAAASF LVDGGSMLAG  60
QLQLIRAAAP QSVSPVETAR GAYGGYEPSP SDVTVAHAPK VAKHLAGEME GSWIHEPYCC  120
PTWFFSGDSF RDPFAAAASE LSLRLRRAES SPTGAVHVSL PDQSPEVSCS GLTHASSAGT  180
GGGVFQPPCG GGGEMAPLHF SQVLPRWSAY AHLTQKTLDE FVGCLLQDVA GFAGSVAGCE  240
ASCLLPMSSC SKTTSSNPSV FLGSEEHAHQ KLRNDLQKLL QLLDQRCNQC MDEIQGAASK  300
YGGMVRPGGG GGGATLLLAP FAHRAVSAMH RRLRARITGE IAAASRRGEP PPPTSSSLTL  360
ADRERSWESA FIQKHWALRQ LRRGDQQSWR PQRGLPEKSV AVLKAWMFEN FLRPYPKDNE  420
KEMLAARSGL SRSQVSNWFI NARVRLWKPM IEEMYEDLKK ASGSGGDEGV AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G239300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700583.10.0homeobox protein ATH1
RefseqXP_012700585.10.0homeobox protein ATH1
TrEMBLK3XWQ00.0K3XWQ0_SETIT; Uncharacterized protein
STRINGSi006358m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-46homeobox gene 1