PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 353aa MW: 36633.4 Da PI: 9.5024

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G216400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	183	230	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Seita.4G216400.1.p 183 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 230 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.68E-9	177	234	No hit	No description
SuperFamily	SSF47459	3.14E-15	177	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-14	179	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MRHRLPLPPE LPAAGGEIQA ALIPAAAPAT GPAVSASSAA GRGGGGGSFT ALLGLPTSQA 60 MELLLPRAAA APPAPAPAPA PAPTFPSDPH LVDRAARFSA FASPSPSSPS PTPPPPPPPA 120 PPAAAAAANA GKRKADQPAD RASKGKSAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA 180 TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL 240 AAVNPRVDFG GLDSFLTTEC GRIAGLNCKN GIDLEQVTWP EMGVHGARHL MQLQQQFWHG 300 DLAHPHQAPS QWEKRGDGHP PVFSSSSPSL FGYDLTSSGA QQPPASKLKT EL*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MRHRLPLPPE LPAAGGEIQA ALIPAAAPAT GPAVSASSAA GRGGGGGSFT ALLGLPTSQA  60
MELLLPRAAA APPAPAPAPA PAPTFPSDPH LVDRAARFSA FASPSPSSPS PTPPPPPPPA  120
PPAAAAAANA GKRKADQPAD RASKGKSAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA  180
TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL  240
AAVNPRVDFG GLDSFLTTEC GRIAGLNCKN GIDLEQVTWP EMGVHGARHL MQLQQQFWHG  300
DLAHPHQAPS QWEKRGDGHP PVFSSSSPSL FGYDLTSSGA QQPPASKLKT EL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G216400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	0.0	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701081.3	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	2e-63	BH048_ARATH; Transcription factor bHLH48
TrEMBL	K3XXX3	0.0	K3XXX3_SETIT; Uncharacterized protein
STRING	Si006781m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.4G216400.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]