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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G215900.1.p | ||||||||
Common Name | SETIT_007844mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 702aa MW: 75701.3 Da PI: 5.499 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.1 | 1.7e-27 | 192 | 245 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++W +LH++Fveav+q+ G ++A+Pk+ile+m+v+gLt+e+v+SHLQkYR+ Seita.4G215900.1.p 192 RPRVQWPGDLHRKFVEAVNQI-GMDRAVPKKILEVMNVDGLTRENVASHLQKYRI 245 59*******************.********************************7 PP | |||||||
2 | Response_reg | 78.3 | 2.7e-26 | 12 | 121 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl vdD+++ +++l++ l++ +y +v+++++++eal++l+e++ ++l++ D+ mp+mdG++ll+ i e ++p+i+++a++e e++ Seita.4G215900.1.p 12 VLAVDDDRVSLKILEKQLKHCNY-NVTAVTHAKEALDMLRERKvgdqFELVISDVVMPDMDGFKLLELIGLEM-DIPVIMLSANDETETVM 100 799********************.*****************99999***********************6644.8**************** PP HHHHTTESEEEESS--HHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelv 108 + ++ Ga d+l+Kp+ e+l+ Seita.4G215900.1.p 101 KGINHGACDYLVKPVRLEQLR 121 ******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.7E-35 | 9 | 132 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-41 | 9 | 152 | No hit | No description |
SMART | SM00448 | 1.7E-30 | 10 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.569 | 11 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.1E-23 | 12 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.76E-29 | 13 | 128 | No hit | No description |
PROSITE profile | PS51294 | 9.576 | 189 | 248 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-18 | 190 | 249 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 190 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 193 | 245 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MDAGKFPAGM RVLAVDDDRV SLKILEKQLK HCNYNVTAVT HAKEALDMLR ERKVGDQFEL 60 VISDVVMPDM DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVRLEQL 120 RGVWTHVLRN SKTDPRNSTS GGNDDADQKL QSGDGDKGER DGANQNRRNS KKKKNDVDGA 180 DEGKENTSPQ KRPRVQWPGD LHRKFVEAVN QIGMDRAVPK KILEVMNVDG LTRENVASHL 240 QKYRIYLKKL SEGKLKNSSP FADGPKAWRC DSVPANSNTN VVESSNHHPE LGRYQSASYF 300 VGSPSSSNVF ARMNSPSAFG AYTFLPTQSV QLMSSQRNFG IPRQDAEPVS HGVNVNLSDA 360 SQCFPNISNG AVFNTSKPSG PSGSSFTNIS NGAEFNTRKP LSLGISGSSI GNTSSDIPTL 420 SSSMHFPSHR SCSSYASILR GKILGASRGI PFEDIADGEM LAPSGHLPLQ CPEFNNQPLV 480 QIQSPSAGLF NQVAWEADAG QFAGLINCSN SWKAAALSRF PDLTHNVGMS NGPSQGNIIK 540 MNQLSRLAAS SGQIPTFGNE YHNQIAGIIG KTAPALSFSE QVAPLNFGSN THYTAMPIGN 600 SDLGSSSSTR PALPNLQIDN SVMPTEMLNG EDTSGNLPEG GTINQQPVGD QVINSNEFLM 660 GTCEVQNGAS GDLDDFLTDW VNEDFVNNGD AFSGGDWDFA P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-23 | 188 | 251 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G215900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681872.1 | 0.0 | two-component response regulator ORR25 | ||||
TrEMBL | A0A368QYL2 | 0.0 | A0A368QYL2_SETIT; Uncharacterized protein | ||||
STRING | Si007844m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13504 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 9e-83 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G215900.1.p |