 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Seita.4G214800.2.p |
| Common Name | SETIT_006771mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C3H |
| Protein Properties |
Length: 233aa MW: 24093.5 Da PI: 9.6717 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.4G214800.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.5 | 8.3e-07 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
Seita.4G214800.2.p 32 KTRMCNKYNTAEGCKWGSKCHFAHGE 57
89**********************96 PP
|
| 2 | zf-CCCH | 37 | 5.5e-12 | 198 | 223 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
Seita.4G214800.2.p 198 FKTKLCENFNK-GSCTFGDRCHFAHGE 223
69*********.*************96 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 26 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-8 | 30 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.558 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 7.16E-14 | 99 | 171 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 2.1E-9 | 101 | 171 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.592 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.2E-14 | 102 | 170 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.2E-10 | 104 | 167 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 4.21E-13 | 104 | 166 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-17 | 196 | 229 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.06E-9 | 197 | 228 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.131 | 197 | 224 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-7 | 197 | 223 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-9 | 198 | 223 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MTNLGGPPVP APPARMPMGH GAPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL 60
GKPMQMDNSM GAPPMGPGPN GHFMAPPMPV PDMVPPSTFG ASATAKISVD ASLAGGIIGK 120
GGTNTKHISR VTGAKLAIRD NEADPNLKNI ELEGTFDQIK HASAMVTDLI VRISGKAPPQ 180
AKNNPGRGPH AGGAGSNFKT KLCENFNKGS CTFGDRCHFA HGESELRKPA AA*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT034266 | 0.0 | BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds. |
| GenBank | BT084833 | 0.0 | BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds. |
| GenBank | JX469975 | 0.0 | JX469975.1 Zea mays subsp. mays clone UT3238 C3H-type transcription factor mRNA, partial cds. |
