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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.4G214800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C3H |
| Protein Properties |
Length: 303aa MW: 31235.6 Da PI: 10.0293 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.4G214800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.9 | 6.5e-07 | 36 | 60 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
Seita.4G214800.1.p 36 KSKPCTKFFSTAGCPFGASCHFLHN 60
7789********************7 PP
|
| 2 | zf-CCCH | 20 | 1.2e-06 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
Seita.4G214800.1.p 102 KTRMCNKYNTAEGCKWGSKCHFAHGE 127
89**********************96 PP
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| 3 | zf-CCCH | 36.5 | 7.9e-12 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
Seita.4G214800.1.p 268 FKTKLCENFNK-GSCTFGDRCHFAHGE 293
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.915 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.3 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-6 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.0E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.5E-5 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-14 | 96 | 132 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-8 | 100 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.558 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.21E-13 | 169 | 241 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 2.1E-9 | 171 | 241 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.592 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 2.0E-14 | 172 | 240 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.9E-10 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.04E-12 | 174 | 236 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 5.3E-17 | 266 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.02E-9 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-7 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.131 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-9 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MDAAGRKRAA PEGANGAGGP KRAREGETTQ MGVGSKSKPC TKFFSTAGCP FGASCHFLHN 60
FPGGYQAVAK MTNLGGPPVP APPARMPMGH GAPDGPPSPA VKTRMCNKYN TAEGCKWGSK 120
CHFAHGEREL GKPMQMDNSM GAPPMGPGPN GHFMAPPMPV PDMVPPSTFG ASATAKISVD 180
ASLAGGIIGK GGTNTKHISR VTGAKLAIRD NEADPNLKNI ELEGTFDQIK HASAMVTDLI 240
VRISGKAPPQ AKNNPGRGPH AGGAGSNFKT KLCENFNKGS CTFGDRCHFA HGESELRKPA 300
AA*
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT034266 | 0.0 | BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds. |
| GenBank | BT084833 | 0.0 | BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds. |
| GenBank | JX469975 | 0.0 | JX469975.1 Zea mays subsp. mays clone UT3238 C3H-type transcription factor mRNA, partial cds. |
