PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G212900.1.p | ||||||||
Common Name | LOC101763662, SETIT_006978mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 304aa MW: 32514.6 Da PI: 4.4067 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.6 | 2.3e-12 | 143 | 194 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +k+ rr ++NR +A +sR+RKk +++ Le k+k Leae ++L l+ + e Seita.4G212900.1.p 143 SKKKRRQMRNRDSAMKSRERKKTYVKDLEAKSKYLEAECRRLSYALQCYAAE 194 79*************************************9999877766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-6 | 139 | 204 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-12 | 139 | 203 | No hit | No description |
PROSITE profile | PS50217 | 9.829 | 142 | 205 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.0E-10 | 144 | 200 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.69E-11 | 144 | 202 | No hit | No description |
CDD | cd14704 | 2.53E-15 | 145 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 147 | 162 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDIDLFADID LDALLASFSG EPAGVSGLID PSPPPPAPTA AHDAEAGSPE SVTSRASPPG 60 EEALTEIERL LMQEGEAELG GEAEGISVEE FFDALYDGGE GEREGKESEA GGSTDGDSGR 120 DEVVEVVTPE AETVEVDGDD PVSKKKRRQM RNRDSAMKSR ERKKTYVKDL EAKSKYLEAE 180 CRRLSYALQC YAAENMVLRQ SLLKDRPVGA PTAMQESAVL TETLPLVSLL WLVSIVCLFL 240 MPGLPNRSPA APSSAGRDLG MVTGKTSSEN PDILELILHG RRCKGTRAKI KLDKLPFHAV 300 AAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 147 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G212900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086464 | 0.0 | BT086464.1 Zea mays full-length cDNA clone ZM_BFc0169L15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965858.1 | 0.0 | bZIP transcription factor 50 | ||||
Swissprot | Q69XV0 | 1e-111 | BZP50_ORYSJ; bZIP transcription factor 50 | ||||
TrEMBL | K3XYH0 | 0.0 | K3XYH0_SETIT; Uncharacterized protein | ||||
STRING | Si006978m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6934 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 2e-15 | basic region/leucine zipper motif 60 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G212900.1.p |
Entrez Gene | 101763662 |
Publications ? help Back to Top | |||
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