PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G206900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 286aa    MW: 31308.7 Da    PI: 10.1472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G206900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.4e-0872116352
                 AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                         y+GV   k+  r++A +        ++k ++l ++gt+ eAa a++aa+++
  Seita.4G206900.1.p  72 YHGVQ--KYGRRYAATLLN----PfVKKVIWLSSYGTPAEAAYAYDAAARS 116
                         78884..555689988555....2467*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-571133IPR001471AP2/ERF domain
PROSITE profilePS5103210.46871127IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-972127IPR016177DNA-binding domain
PfamPF008471.5E-472117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1172128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MYRSKSSFGE GARLPLDPCL RKAARRPRSI ESYSYHSLSR ISGSAVELAR QAAARDDVRA  60
AREVAELPVM RYHGVQKYGR RYAATLLNPF VKKVIWLSSY GTPAEAAYAY DAAARSVIRH  120
WARLNFPELS PAAREVAAVD LTRMRRAPEP AHQQQPALRR QALLIRCWAP EPAGAAPPAF  180
PFQREVTPQV YRVHYRPFSA AIGGELYATP FVLGVHDLNE PMPNAPASSA LSSTKPGLAA  240
AAPNRRELPN PSAMAMEPDQ SVVGDNFTYV DGASLPAAPT FGWVW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G206900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967158.11e-156ethylene-responsive transcription factor 12
TrEMBLA0A368QWR20.0A0A368QWR2_SETIT; Uncharacterized protein
STRINGSi007967m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610