PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G199100.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 273aa MW: 27876.1 Da PI: 9.3463

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G199100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.3	3.3e-08	177	219	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+aL++e++ l+ + +l +e+ Seita.4G199100.1.p 177 RPRKKMRLPEIQQLVRSLSVENDALREEMKALQRACTTLSKEN 219 89*************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.2E-5	177	216	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MTAVDAESCA VVAAAADIIC SLRGADLAGW TPPWRKDAAP ALPSACDGGG GGQEVGGDAR 60 GMAWPAVARG KRSRSRRAGT PSASGSASAG AAAKEDEEEE KKKKKGRRGA RGSPASPLDY 120 SGGSGSGAST SGGEDGAFCS QPAPASATAA PSIKQVGGLA GRRSILPVPP PRPAGQRPRK 180 KMRLPEIQQL VRSLSVENDA LREEMKALQR ACTTLSKENG KLETRLDHSS KRNGMISAED 240 KAKPKPGSQE AEAEQDAGNG FVLPDLNLPA DD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	75	KRSRSR
2	176	182	RPRKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G199100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054292	2e-71	BT054292.1 Zea mays full-length cDNA clone ZM_BFb0217J09 mRNA, complete cds.
GenBank	KJ728326	2e-71	KJ728326.1 Zea mays clone pUT6607 bZIP transcription factor (bZIP93) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965736.1	0.0	uncharacterized protein LOC101785507 isoform X1
TrEMBL	A0A368QW56	0.0	A0A368QW56_SETIT; Uncharacterized protein
STRING	GRMZM2G050912_P01	4e-89	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Seita.4G199100.1.p