PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G198600.1.p
Common NameSETIT_008512mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 697aa    MW: 74956.4 Da    PI: 6.47
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G198600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.98e-27176229155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         ++r++W+ +LH++Fvea++q+ G ++A+Pk+ile+m+v+gL++++v+SHLQkYR+
  Seita.4G198600.1.p 176 RQRIKWSGQLHRKFVEAINQI-GMDRAVPKNILEVMNVDGLSRDNVASHLQKYRI 229
                         58*******************.********************************7 PP
2Response_reg73.58.5e-25121241109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                         vl vdD+ + +++l+++l+  +y++v+++ ++e al++l+e++     +Dl++ D+ mp++dG++ll+ i  e  ++p+i+++a++e++ +
  Seita.4G198600.1.p  12 VLAVDDDCTSLSVLKRLLQLCNYNNVTTVMEAETALDMLRERKdrddqFDLVISDVFMPDIDGFKLLELIGLEM-DIPVIMLSANDEMDIM 101
                         799************************************888888999**********************6644.8*************** PP

                         HHHHHTTESEEEESS--HHHHHH CS
        Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                          + +k Ga d+l+Kp  ++++++
  Seita.4G198600.1.p 102 MKGIKNGACDYLVKPACMDHIRN 124
                         ***************88877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.2E-349149No hitNo description
SuperFamilySSF521723.84E-309134IPR011006CheY-like superfamily
SMARTSM004481.4E-2610126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.69511130IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2112124IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.45E-2513129No hitNo description
SuperFamilySSF466893.05E-18173233IPR009057Homeodomain-like
PROSITE profilePS512949.873173232IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-26174234IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-23177229IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDMNKFLAGL RVLAVDDDCT SLSVLKRLLQ LCNYNNVTTV MEAETALDML RERKDRDDQF  60
DLVISDVFMP DIDGFKLLEL IGLEMDIPVI MLSANDEMDI MMKGIKNGAC DYLVKPACMD  120
HIRNIWKHVV RKDRTDLRNS VTDGKKSAHH TKHSKKNKKD GDGAEKDKEG TSTQKRQRIK  180
WSGQLHRKFV EAINQIGMDR AVPKNILEVM NVDGLSRDNV ASHLQKYRIY LRKLSEGTLS  240
HSNPFVDEPQ AWLSDTTANM NGPNSSQDHL ELVQPSPSSI GTSSSSNGFA RISCPSAFGT  300
HNLQQDTEPV GNGVNLPTNV VPVSVPVQDV SRSIFSGRSY GTVSIGGLSS ASQCFPSGPS  360
SSSSGNISNG VVFNTSRPFS SGTSGNSFAN ISNDSSPSTT SMHFPSTRSC SSYASILRRK  420
MLDANRGIPF DADSFFEEIA GGEMPALPSY LALQSPELAN QHSIQIQPSS TGLFNQVAPS  480
SHHLPSHSSE LVNQPSIQIQ PSPTGHFNKV ARESHQFAGL CNPSNSWSVG VQSRFPDVGH  540
SAGTSIINSS QGSSARINQT SRFVASSGDV PTFGSEYQNQ MAGLSGRTTP MLGFSGQVAP  600
FNFGISAMSV GSSALGSSSS VGPALANHHI GNSFLPTQML SDRGSSGNFL GGGTVDQQAI  660
GDQVSNNNEH PTGRSEAQDG AMIDDLDDFL ADWVKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20172235164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G198600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812922.10.0two-component response regulator ORR24-like isoform X2
TrEMBLK3Y2T20.0K3Y2T2_SETIT; Uncharacterized protein
STRINGSi008512m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.14e-70response regulator 10