PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G187300.1.p

Common Name

LOC101779340, SETIT_007043mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 286aa MW: 30388.8 Da PI: 5.5326

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G187300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	55	1.8e-17	121	174	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L++eN +L k+l+e +++ Seita.4G187300.1.p 121 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENATLFKQLSEANQQF 174 679*****************************************9888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-18	119	183	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.679	121	173	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-15	121	173	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-12	123	175	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-14	123	174	No hit	No description
CDD	cd14702	1.29E-6	124	174	No hit	No description
PROSITE pattern	PS00036	0	126	141	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKKCPSELQL EAFIRESGEG AVSGAAESKP SGSGPSEPGG SGVFSPGGIG FGDTSAMDGN 60 SWWFGSIRPA NPVASQTASI SASPRATTSA NHALESESDS DSESLYEVEG GSCERGTKSM 120 ETKRIRRMVS NRESARRSRR RKQAQLSELE SQVEQLKGEN ATLFKQLSEA NQQFTTAVTD 180 NRILKSDVEA LRVKVKMAED MVARSAMSCG LGDLGLAPYL NSRKMCQALN MLTVTGLDLL 240 GSDAFRGTTA ARQVQNSPVQ STASLESLDN RKSSEVTSCA ADMWP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	142	RRSRRRKQ
2	137	142	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G187300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	0.0	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-105	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	K3XYN5	0.0	K3XYN5_SETIT; Uncharacterized protein
STRING	Si007043m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-30	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Seita.4G187300.1.p
Entrez Gene	101779340

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]