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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.4G175600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
G2-like |
| Protein Properties |
Length: 537aa MW: 56924.9 Da PI: 6.4762 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.4G175600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 99.8 | 1.8e-31 | 115 | 168 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
Seita.4G175600.1.p 115 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 168
8****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 537 aa
Download sequence Send
to blast |
MGEEKEKVVM EILEDDEKRS SENSVPSAVL DLNEGFGEGS DGGEVGEDAD DDDVEEEEDY 60
EGGSTSEVAG AGSSNSSSNH NSGSNMDHDM NSGSKGEGSS ERAPAVRQYN RSKLPRLRWT 120
PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK LDHESGHERA 180
AISSVFSPMG FHMRRGDQRF HDMFFQRAAG SAISSRLLHA GGFFGSRNAV SPEASRLFGL 240
LQRRQPTMQT FDFKNYSSLR NQEWTFSQHA AAAARAGAIN DHGPARGLIH DMIFRKDGKP 300
TSHLFDVRDA IASNRTSSAA AAGGATDHGG RIGSSDWIGS SSRPLSRTTS AAAASTGFAL 360
GSLHLLSKGM RGAAAGSNGY HPNGDANTTS SDPVVTREAL GSRLETHLVE PKNPSKVIGE 420
MRTGTPAKRT KASMEENGGG SGMPDLQLSL SPNVGGDADK AKKRKILSIA LSEQEEVDSD 480
KMLPLSLSLS LRGGDSGGEG SGGDAGRLEA ETGSSSKKAV LGLSTLDLTM SIKALE*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 6e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 6e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 6e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 6e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243223 | 1e-120 | AC243223.1 Panicum virgatum clone PV_ABa006-H05, complete sequence. |
