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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.4G108100.1.p |
Common Name | LOC101784328, SETIT_006412mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
E2F/DP |
Protein Properties |
Length: 452aa MW: 49323.3 Da PI: 7.628 |
Description |
E2F/DP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.4G108100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | E2F_TDP | 72.6 | 4.4e-23 | 85 | 150 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
rk+ksL+ll+++f++l+ +++ +++ l+++ak+L v +rRRiYDi+NVLe+++++ +++kn+++w g
Seita.4G108100.1.p 85 RKQKSLGLLCSNFVALYDREDVETIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 150
79****************9999************...**..****************************87 PP
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2 | E2F_TDP | 79.2 | 3.6e-25 | 229 | 309 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71
rkeksL+lltq+f+kl+ + e ++v+l+e+a+ L+ e ++++k+RR+YDi+NVL++lnliek ++k+++rw g
Seita.4G108100.1.p 229 RKEKSLGLLTQNFVKLFLTMEVETVSLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqaeTRKPAFRWLG 309
79****************************************************************9999999******87 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication |
GO:0005634 | Cellular Component | nucleus |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MDAASAAAGP SSSAAEAAAA GPSSSAAAAR PSSSSGAEPP AAAAQPPPPA AAPQVLFQVP 60 VQVGGASSGS GSSVARACRH HAYSRKQKSL GLLCSNFVAL YDREDVETIG LDDAAKRLGV 120 ERRRIYDIVN VLESVGILVR RAKNRYTWLG FGGVPAALKE LKERALREMS GSPVLLPMEE 180 SSTANLSDDE DDKLEDGDED AESEKLSQSI DNTSDKPDAP GCRLRSDHRK EKSLGLLTQN 240 FVKLFLTMEV ETVSLDEAAR LLLGEGHAES NMRTKVRRLY DIANVLSSLN LIEKTQQAET 300 RKPAFRWLGQ AKRMQENNVT VALAPVRPNK RAFGTDLTNI DNKRGRLDSA MENKAKLMQG 360 AGNIVKTFER QLGQGNRSDF VYGPFHPAVA KKQETDDHTI KQKERRTIQD WENLAVSFRP 420 QYQNQALNDL FGHYVEAWKS WYLDLTRETS S*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728027 | 0.0 | KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds. |