PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G083500.1.p
Common NameSETIT_006601mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 319aa    MW: 34201.4 Da    PI: 10.4251
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G083500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57350.46.1e-16117205397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         +++lw+e De++lL G   fk++tg+ p   d+ +++e +++s+s +  +  +  K++rLK Kf++ v         + s++h++ + +l+
  Seita.4G083500.1.p 117 ISKLWTEADEVALLTGAAAFKDRTGVAPRLpDMADLFESIRDSLSPHLDQAKMYYKLKRLKSKFQHSVPG-------DSSTAHEHRVRDLC 200
                         578***********************98877**********************************99988.......56788888999999 PP

              DUF573  93 kkiWg 97 
                           +W+
  Seita.4G083500.1.p 201 AALWD 205
                         99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.3E-15118205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPSKRPSPHA MDEAGAAASA SAARLRPSTP RSKKRSSRSK PRARSRDRRR SPNPNPSSRR  60
ERGSEPGSAV PAPAPSRKSD RRPRPRYIPD SATLATAIAS SAAPSSGGGG RGSAGAISKL  120
WTEADEVALL TGAAAFKDRT GVAPRLPDMA DLFESIRDSL SPHLDQAKMY YKLKRLKSKF  180
QHSVPGDSST AHEHRVRDLC AALWDAEPAR PVENDVVEAG EAEEDDADGG FTGADREGSA  240
RLPMVKEVLG EYWKVNGQGL SGVSLEKGLA LLGSQEASAA EVKWRRQLEA DMRIQMRRHE  300
LGKEVYGLLI DAIKGLGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G083500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964913.10.0probable transcription factor At1g66420
TrEMBLA0A368QU110.0A0A368QU11_SETIT; Uncharacterized protein
STRINGSi006601m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.17e-09DNA-binding storekeeper protein-related transcriptional regulator