PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G039500.1.p | ||||||||
Common Name | LOC101770551, SETIT_008108mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 20787.1 Da PI: 5.3373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1.1e-15 | 20 | 68 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++k +g+Wv+e+r p++ r r++lg++ t+e+Aa+a +aa ++l+g Seita.4G039500.1.p 20 YKGVRQRK-SGSWVSEVRLPNS---RERIWLGSYYTPEKAARAFDAASLCLRG 68 9*******.7******999833...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.994 | 19 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-22 | 19 | 80 | No hit | No description |
SMART | SM00380 | 3.3E-23 | 19 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-24 | 19 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 20 | 31 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-15 | 20 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-9 | 20 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSLPPEQPHE RRSPSGEINY KGVRQRKSGS WVSEVRLPNS RERIWLGSYY TPEKAARAFD 60 AASLCLRGPG GADGLNFPSS PPAVRRRTSD RKEVLAAALS HANQSAATES PSANGGAPME 120 RVPTLPPAEP KVSPEAESTD WSQLLPPMPS PIRMGSHTYL PVSPTAAAAE DVDMEEEEDS 180 GSCYGLWSPS FW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G039500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966649.1 | 1e-137 | ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 9e-28 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | K3Y1P2 | 1e-135 | K3Y1P2_SETIT; Uncharacterized protein | ||||
STRING | Si008108m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G039500.1.p |
Entrez Gene | 101770551 |
Publications ? help Back to Top | |||
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