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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.4G020600.2.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 330aa MW: 36550.4 Da PI: 9.9441 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.4G020600.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 388 | 1.4e-118 | 2 | 329 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye......paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82
md+ g+re r+++ +y+ ++lk++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+
Seita.4G020600.2.p 2 MDNLGHREngRQRPdQYKavhtqwMMPQLKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNALA 92
9999*99999****99998886543389*************************************************************** PP
GAGA_bind 83 alllvensla.salpvgvqv...lsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
al+l++++ +++++g + l+gtk+i++++qls+ ql+ds+++ +re++++ea+pi +a++++ + kk++k++++++p+++
Seita.4G020600.2.p 93 ALELARTNGFnMNNGNGFHQvppLNGTKNIHNHDQLSHvqtspLQLADSPYDhTREMHISEAYPIATAPSSIGKGKKPRKNSSQASPLKRP 183
**998887654555555544112689*********998899999********9*************************************9 PP
GAGA_bind 164 ak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246
+ +k+kk + ++k+ +++ e+ +k+e+k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+yPLPv
Seita.4G020600.2.p 184 SGvlRKTKKVAGDWKNGGMSGGGEDsarasvMKNEWKDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSMYPLPV 274
99887777788999999998866445788889*********************************************************** PP
GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+++rr+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir
Seita.4G020600.2.p 275 MPNRRHARMGGRKMSGSAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 329
******************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MMDNLGHREN GRQRPDQYKA VHTQWMMPQL KDHHSMNLLA LMNEKDSAIR ERDHALAEKK 60
AAIAERDMAF AQRDAAMAER NAAIVERDNA LAALELARTN GFNMNNGNGF HQVPPLNGTK 120
NIHNHDQLSH VQTSPLQLAD SPYDHTREMH ISEAYPIATA PSSIGKGKKP RKNSSQASPL 180
KRPSGVLRKT KKVAGDWKNG GMSGGGEDSA RASVMKNEWK DQDLGLNQVP FDESTMPAPA 240
CSCTGELRQC YKWGNGGWQS SCCTMSMSMY PLPVMPNRRH ARMGGRKMSG SAFTKLLSRL 300
AAEGHDLSTP VDLKDHWAKH GTNRYITIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF184759 | 0.0 | KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence. |
