PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G006100.2.p
Common NameLOC101774458, SETIT_006303mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 494aa    MW: 53816.7 Da    PI: 6.947
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G006100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.8e-093233601954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Seita.4G006100.2.p 323 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 360
                         554459******************************88 PP
2BELL100.31.4e-32184252472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         el++ ka+Lls++eeVd+rY++y+eq+++v  sFeavag g++++Yt+lAl+a+SrhFrcL+da++ q+
  Seita.4G006100.2.p 184 ELERMKARLLSMVEEVDRRYRRYREQMRAVEVSFEAVAGAGASQVYTRLALRAMSRHFRCLRDALVAQV 252
                         78999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-53112250IPR006563POX domain
PfamPF075261.0E-42118248IPR006563POX domain
PROSITE profilePS5007111.71301364IPR001356Homeobox domain
CDDcd000864.42E-12304365No hitNo description
SMARTSM003896.5E-9304368IPR001356Homeobox domain
SuperFamilySSF466896.42E-17305371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27307370IPR009057Homeodomain-like
PfamPF059202.3E-17321360IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAVHHPHLLD FSPPPNTVAM EPPPPSFDHG HLLALHVDGT DMTVGGGGGV VPTHHRVLAA  60
DDTAAWPQAA VSLSLYNYNA AGGPSSLFGH HQHQFAVPPA AAVSSLEPTS SMQRPFQLRS  120
SKYLVPVQEL LSEFCSLEGD LLHAMNGGVN KRALNGGNKW DDVETSSSSG LWGHPSLSSM  180
DLLELERMKA RLLSMVEEVD RRYRRYREQM RAVEVSFEAV AGAGASQVYT RLALRAMSRH  240
FRCLRDALVA QVRALRKAMG ERDGSASSPA GATKGDTPRL KVLDQCLRQQ RAFQQPGTIE  300
NYPWRPQRGL PERAVAVLRA WLFEHFLHPY PNDVDKHILA RQTGLSRSQV SNWFINARVR  360
LWKPMIEDMY TEEVKQQSEA AQNPSGGGAG AGAGAVKPEQ QSTTTIGESA FRITSAGNNP  420
TTTSINVTDG GDHHHLLSSY PSLHGSVSLT LGLQQQPFAS PMMMMLHGEE TEEPVLPYID  480
LTAGSQFLHD LAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15310367158Homeobox protein Meis1
4xrs_B2e-15310367158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G006100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399090.0BT039909.1 Zea mays full-length cDNA clone ZM_BFc0050K05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964302.10.0homeobox protein BEL1 homolog
RefseqXP_004964303.10.0homeobox protein BEL1 homolog
SwissprotQ388977e-99BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLK3XWJ50.0K3XWJ5_SETIT; Uncharacterized protein
STRINGSi006303m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.16e-96TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]