 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.4G001600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
CO-like |
| Protein Properties |
Length: 280aa MW: 30164.4 Da PI: 7.237 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.4G001600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 17.1 | 1.1e-05 | 8 | 50 | 6 | 42 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
C+ + ++ fC C+ lC C + H g H +vpl
Seita.4G001600.1.p 8 CNSCATGDAIVFCLLCGARLCLHCDAALH-GataaaglHPRVPL 50
9****988*********************.65889999988886 PP
|
| 2 | CCT | 57.9 | 3.6e-20 | 222 | 265 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Re+a+lRY+eK+k+R+F K+i Y+sRKa+A++R+RvKGrF+k++
Seita.4G001600.1.p 222 RERAKLRYNEKKKNRRFCKQIMYASRKARADTRKRVKGRFAKAS 265
99***************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MAMPLCDCNS CATGDAIVFC LLCGARLCLH CDAALHGATA AAGLHPRVPL CDACRAAPAA 60
LRDHHSGHTL CSGCAARVAP AGARTTVTQY TGCPEPAELL RLISAEAPQS HDDFEVWLAN 120
KLPHLLDDDD GQLTEGWDVA LETAKLERML AECHAADLSP AASCQLQPQQ AVTMPAPPPV 180
QPWQSDAAAA ALPFCTMPLP ESPSQPPPQQ DASAVAKKRE ERERAKLRYN EKKKNRRFCK 240
QIMYASRKAR ADTRKRVKGR FAKASTSHDP HPIIHDDDN*
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G21880.1 | 4e-13 | B-box type zinc finger protein with CCT domain |
