PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G395000.1.p
Common NameLOC101784301, SETIT_021201mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92896 Da    PI: 6.8117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G395000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-182380457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Seita.3G395000.1.p 23 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80
                        6789****************************************************97 PP
2START163.41.6e-511723792204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l vi +g  g+
  Seita.3G395000.1.p 172 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRASWYRDCRHVEILHVIPTGngGT 261
                         68999*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++++++al++l+  Rdf+++Ry+  l +g++vi+++S+++ +  p     + ++Rae+lpSg+li+p+++g+s + +v+hvdl+++++
  Seita.3G395000.1.p 262 IELIYMQTYALTTLAGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPCgpnAPTFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLNAKSV 352
                         **************999****************************98887889************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s  + ++k++ a+l++ +
  Seita.3G395000.1.p 353 PEVLRPLYESPKILAQKMTAAALRHIR 379
                         **********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241781IPR001356Homeobox domain
SMARTSM003898.5E-151985IPR001356Homeobox domain
SuperFamilySSF466892.1E-162184IPR009057Homeodomain-like
CDDcd000861.60E-152282No hitNo description
PfamPF000469.7E-162380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-182480IPR009057Homeodomain-like
CDDcd146862.40E-674113No hitNo description
PROSITE profilePS5084827.617162362IPR002913START domain
Gene3DG3DSA:3.30.530.204.6E-23170354IPR023393START-like domain
SMARTSM002346.5E-43171381IPR002913START domain
SuperFamilySSF559613.57E-36172382No hitNo description
PfamPF018522.6E-49172379IPR002913START domain
PfamPF086709.8E-40710852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MAAVASRERL SPGAAPQVDT GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRDCPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYDNG  120
YMKNQLHSPS VATTDTSCES VVTSGQQYQQ QNPAVPHPPQ RDANNPAGLL AIAEETLAEF  180
MSKATGTAVN WVQMVGMKPG PDSVGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRAS  240
WYRDCRHVEI LHVIPTGNGG TIELIYMQTY ALTTLAGPRD FWTLRYTSGL DDGSLVICER  300
SLTQSTGGPC GPNAPTFIRA EVLPSGYLIR PCDGGGSMIY IVDHVDLNAK SVPEVLRPLY  360
ESPKILAQKM TAAALRHIRQ IAHESSGEIP YGAGRQPAVL RTFSQRLSRG FNDAVSGFPD  420
DGWSPLLSSD GPEDITITVN SSPNKLVGSH VSPSPFFSAI GGGIMCAKAS MLLQNVPPAL  480
LVRFLREHRS EWADPGVDAY SAASLRANPY AVPGLRAGGF MGNQVILPLA RTLEHDESLE  540
VIRLEGHGFS HDEVLMSRDM FLLQLCTGVD ESAPGACAQL VFAPIDESFA DDAPLLPSGF  600
RVIPLDDKMD VPSATRTLDL ASALEVGSGA GSRSPSDASG SCTTRSVLTI AFQFSFENHL  660
RESVAAMARQ YVRGVMASVQ RVAMAIAPSR LGSHIQLKHP HPPGSPEALA LATWIGRSYR  720
VHTGSEIRWS DTEGVDNPLM PFWKHSDAIL CCSLKPPFML KFANSAGFDI LETTMVNIQD  780
MPLEGVLDDE GRKLLFSELP KIMQQGFAYL PGGVCRSSMG RQASYEQAVA WKVVGDDGAP  840
QGLALMLVNW TFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G395000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674830.0BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963232.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLK3Z3T30.0K3Z3T3_SETIT; Uncharacterized protein
STRINGSi021201m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]