 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.3G388300.1.p |
| Common Name | LOC101759981 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
YABBY |
| Protein Properties |
Length: 197aa MW: 22068.1 Da PI: 8.9999 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G388300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 240 | 5.1e-74 | 4 | 168 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93
+ +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ l+ ++h + +l + +++ ++ ++ n+ + s+s
Seita.3G388300.1.p 4 HIAPADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQDH-----QLQLFDSQENIKHGINGNHLEFGSSS 89
56789******************************************************9.....33344555555555666666666666 PP
YABBY 94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ + ++ ++ne++ ++++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
Seita.3G388300.1.p 90 SKFRLPMMysPQNEHHLLQEQTLNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 168
6666666642444444444444488****************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MSAHIAPADH VCYVHCNFCN TVLAVSVPGN SMLNIVTVRC GHCTNLLSVN LRALMHSLPE 60
QDHQLQLFDS QENIKHGING NHLEFGSSSS KFRLPMMYSP QNEHHLLQEQ TLNARPPEKR 120
QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH YPNIHFGLSS GREGGKKLVD 180
EAVSVTPPPK KIQGLY*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035812 | 1e-87 | BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds. |
| GenBank | BT041668 | 1e-87 | BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds. |
| GenBank | BT068409 | 1e-87 | BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds. |
| GenBank | KJ726849 | 1e-87 | KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds. |
