PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G372700.1.p
Common NameSETIT_024235mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 366aa    MW: 42066 Da    PI: 8.8658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G372700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-1639127299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk +     +++g +++p kf+++ +g+ ++   l l+ +sg++W +++    ++++ ++ +GW +F++a++L+e+D ++F+ +g+ +f  
  Seita.3G372700.1.p  39 FKLM--TGDFAQG-ISIPEKFVSNLNGQITK--GLNLKAPSGETWLIEV--AENGDELFFMSGWDDFARAHELQENDLLIFTCSGNYSF-- 120
                         5555..4455555.9*******887877555..5***************..99*9**99999********************9998888.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                          v++f++
  Seita.3G372700.1.p 121 DVQIFDA 127
                         9999987 PP
2B3352.5e-112693561199
                         HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +k+ +l++   fa++h +g   ++  l l+  + ++W v++ y  ++ r +    W +Fv +n+L+   +++F+l++  +++++vv+v+rk
  Seita.3G372700.1.p 269 HKNYLLIVHHGFAADHlEGR--SHDILLLRPNRKKKWYVRY-YHASRARGFNCCRWIKFVGDNRLRKDHICIFELMKGgRRTTMVVHVLRK 356
                         45556778888999996433..333455555888*******.5444444334456*******************99777*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2132130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.28135128IPR003340B3 DNA binding domain
CDDcd100173.82E-1637126No hitNo description
Gene3DG3DSA:2.40.330.103.1E-2037130IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-1338127IPR003340B3 DNA binding domain
SMARTSM010194.4E-938128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14250355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-14251355IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-11256355No hitNo description
PROSITE profilePS508639.404258357IPR003340B3 DNA binding domain
SMARTSM010194.1E-6258357IPR003340B3 DNA binding domain
PfamPF023622.5E-9264356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPIRECRMSK MVQQGCESCR KWQEHCYLEH MGTSKVRFFK LMTGDFAQGI SIPEKFVSNL  60
NGQITKGLNL KAPSGETWLI EVAENGDELF FMSGWDDFAR AHELQENDLL IFTCSGNYSF  120
DVQIFDASGC EKVPCFFTSK KGPCTHKHSD GIVDQQAEHC ILSDSDDLRM PMRLIGSPNK  180
ASTSKKKSGK TRPRKEPEFP NSNYHIKQEL ISDEEQSDYR LVDSNYYYYY SRSASNLTGD  240
ERDQIFSLAS IRPGNPAFVA VLQKTHIGHK NYLLIVHHGF AADHLEGRSH DILLLRPNRK  300
KKWYVRYYHA SRARGFNCCR WIKFVGDNRL RKDHICIFEL MKGGRRTTMV VHVLRKVDGR  360
FVLVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G372700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-156Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A368QPU80.0A0A368QPU8_SETIT; Uncharacterized protein
STRINGSi024235m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-32B3 family protein