PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G372500.1.p
Common NameSETIT_024966mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 353aa    MW: 40990.4 Da    PI: 8.5581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G372500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.5e-1831119299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk +     +++g +++p kf+++++g+   +  + l+  sg++W v +  +k  ++ +lt+GW++Fvka +L+e+D+++F+ +g+s+f  
  Seita.3G372500.1.p  31 FKLM--TGDFAKG-VSIPVKFVRNFNGQI--TEVVELKAASGETWHVGV--DKIADELLLTSGWEDFVKARELQENDVLLFTSSGNSSF-- 112
                         5555..4445555.9*******9998884..4579**************..*******************************9998999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                          v +f++
  Seita.3G372500.1.p 113 DVLIFEA 119
                         8888765 PP
2B3391.4e-122553431099
                         HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                           +++ l++p +fa++h ++  ++++++l   ++  +W v++ y+ + ++   l+    +Fv++n+L+e D++vF+l++  ++ +++v+v+
  Seita.3G372500.1.p 255 QRRNNFLTVPSRFAADHLHE--RPQEIILCRpRRKDRWFVRYYYTSYIRGfQNLQ--FFKFVHDNKLREEDTCVFELMKGaKRVTMTVHVI 341
                         3456889**********655..56678887746779******8865555534455..889****************99877*********9 PP

                         -S CS
                  B3  98 rk 99 
                         rk
  Seita.3G372500.1.p 342 RK 343
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-2123122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.46527120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-2129122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-1729117No hitNo description
SMARTSM010194.2E-1230120IPR003340B3 DNA binding domain
PfamPF023628.8E-1530118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17237343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-16238342IPR015300DNA-binding pseudobarrel domain
CDDcd100179.38E-10243342No hitNo description
SMARTSM010191.2E-5245344IPR003340B3 DNA binding domain
PROSITE profilePS508639.488246344IPR003340B3 DNA binding domain
PfamPF023629.7E-11247343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMVAEKRCER CRKWQEHYYR EHMDVTKIRF FKLMTGDFAK GVSIPVKFVR NFNGQITEVV  60
ELKAASGETW HVGVDKIADE LLLTSGWEDF VKARELQEND VLLFTSSGNS SFDVLIFEAS  120
GCEKLSSLFD HKTGPYRMHK HLNDIAGRHA EQYITDSEDT VVPSQLVGST HKASTAKKHN  180
CKGKEPQSLN SSSFHVKHEA IEEEESNDSY ADSKLYYSRN ANQVTEEEKE KILSLASIQP  240
ENPAFVAVLR RNHRQRRNNF LTVPSRFAAD HLHERPQEII LCRPRRKDRW FVRYYYTSYI  300
RGFQNLQFFK FVHDNKLREE DTCVFELMKG AKRVTMTVHV IRKVGDRFDL VG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G372500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963040.10.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-132Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A368QNG80.0A0A368QNG8_SETIT; Uncharacterized protein
STRINGSi024966m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-32B3 family protein