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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.3G371900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
Dof |
| Protein Properties |
Length: 270aa MW: 27386.3 Da PI: 9.6958 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G371900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 110.3 | 9.5e-35 | 61 | 115 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
+cprC s++tkfCyynny+++qPr+fC+aCrryWt GG++rnvPvGg++rk+ +
Seita.3G371900.1.p 61 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSIRNVPVGGSTRKRPR 115
68*************************************************9865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MEAPLHQSPV PLPLPPPQEE AVIGAALLRQ AEAARAMMAA AAAAQHHQQQ QPPAAAAMGR 60
EQCPRCASRD TKFCYYNNYN TAQPRHFCRA CRRYWTLGGS IRNVPVGGST RKRPRPARPT 120
RALAAATATT TPASSAPFDT SSSSSPVAPA AALQGGLLGS LLLGSASAST LLALGAAPLL 180
EGRLGFGPGL GQPALLAGAN AAAGDLSRLD FGGAGPLLWP AAATVLEGDR AFPLPPPAAA 240
LWQKELAAAA PPPVEAGGLH HGGSPHLLL*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY661659 | 1e-72 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
| GenBank | HQ540084 | 1e-72 | HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds. |
