PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G370500.1.p
Common NameLOC101780927, SETIT_022813mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 298aa    MW: 32753.3 Da    PI: 4.7286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G370500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-112252651055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Seita.3G370500.1.p 225 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 265
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-14215281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12220276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-12224269No hitNo description
PfamPF000103.7E-8225265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEAGGLITEV GWTEFDFLSH GEESEVMAQL LGGFPSHGEE GHQDLPWSDQ ASNAYSDNIG  60
SSLAVQPAYE GYYLSNSNEA LGISSCIAPD DLGSVQEYGA TEFVNMFSNH SPNFYGNGDR  120
SCEDLDVPNM SMLDSVSATN KRKHLAEELD GQTRGRKCAR KVQTKRTKRA KQSRDEDASR  180
SPTSCCTSDS DSNASLESLD ADALPKGKAR AGRGATTEPQ SIYARKRRER INERLKILQN  240
LVPNGTKVDI STMLEEAVHY VKFLQLQIRL LSSDDMWMYA PIAYNGMNIG IDLSMDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G370500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616591e-45AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964147.20.0transcription factor bHLH139
TrEMBLK3Z8E30.0K3Z8E3_SETIT; Uncharacterized protein
STRINGSi022813m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-51bHLH family protein