PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G355500.1.p
Common NameLOC101766343, SETIT_021859mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 495aa    MW: 52239.5 Da    PI: 7.6928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G355500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.5e-32229285259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Seita.3G355500.1.p 229 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 285
                         8**************************************99.***************8 PP
2WRKY1084.6e-34385443159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Seita.3G355500.1.p 385 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 443
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28225287IPR003657WRKY domain
SuperFamilySSF1182902.48E-25227287IPR003657WRKY domain
SMARTSM007742.5E-34228286IPR003657WRKY domain
PfamPF031061.5E-24229285IPR003657WRKY domain
PROSITE profilePS5081123.192229287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-37371445IPR003657WRKY domain
SuperFamilySSF1182902.88E-29377445IPR003657WRKY domain
PROSITE profilePS5081137.413380445IPR003657WRKY domain
SMARTSM007747.0E-40385444IPR003657WRKY domain
PfamPF031064.0E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSARPPPPPR PHLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDADAG GGGGPGGGAS  60
SGAASFTQLL TGSLPQPQQQ QREAAERGRG GGVARAGPAL SVAPPASASA GASVFTVPPG  120
LSPSGLLDSP GLLFSPAMGG FGMSHQQALA QVTAQATHSP LRMFDHIEQP SFSAAAASSG  180
ALQHMNSSAN MTGMPEMAIT TANNDNASFQ SAEPSQRYQV NAPVDKPADD GYNWRKYGQK  240
VVKGSDCPRS YYKCTHPNCP VKKKVEHAED GQISEIIYKG KHNHQRPPNK RAKDGNSSAA  300
DQNEQSNDTT SGLSGAKRDQ DAIYGMSEQV SGLSDGDDMD DGESRPHEVD DADNESKRRN  360
IQISSQRTLS EPKIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTFAGCNVRK  420
HIERASSDPK AVITTYEGKH NHEPPVGRGS NQNAGVSQQR GQNSISSNQA SLSIADYSIT  480
NQRPIGLLQF KSEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-39219445877Probable WRKY transcription factor 4
2lex_A8e-39219445877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G355500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577400.0EU957740.1 Zea mays clone 1613457 SPF1-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962924.10.0probable WRKY transcription factor 3
TrEMBLK3Z5P10.0K3Z5P1_SETIT; Uncharacterized protein
STRINGSi021859m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-94WRKY DNA-binding protein 3