 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.3G325400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
GRAS |
| Protein Properties |
Length: 498aa MW: 55636.4 Da PI: 8.0523 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G325400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 86.8 | 3.5e-27 | 153 | 263 | 1 | 114 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l++lL++cA+av+s+d ++a++lL++++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts ++ l+a++l+ + +
Seita.3G325400.1.p 153 LRTLLIHCAQAVASDDRRNATELLKQIKQHASPQGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVDILQAYQLYMAAICFK 240
6789************************************************************999998...9***************** PP
GRAS 92 kfshltaNqaIleavegeervHi 114
k+ ++ Nq+I++a g++++Hi
Seita.3G325400.1.p 241 KVVFIFSNQTIYNASLGKKKIHI 263
**********************9 PP
|
| 2 | GRAS | 203.1 | 1.6e-62 | 269 | 487 | 155 | 373 |
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
++++eetg+rL+k+A+e+gvpf+++v++a+++e+++ e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ +
Seita.3G325400.1.p 269 TQRIEETGRRLSKYAQEFGVPFKYQVIAASKMETIRAEDLNLDPEEVLIVNCLYQFKNLMDESVLIESPRDIVLNNIRKMRPHAFIHAIVN 359
6899*************************************************************************************** PP
GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
+ +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ ++++
Seita.3G325400.1.p 360 GSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSNQRMLIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPDVVQV 450
******************************************************************************************* PP
GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
++ + ++ + + ++ ++++l++gWk+r L+++S W
Seita.3G325400.1.p 451 VRDKVDGCYHKDFVIDIDHNWLLQGWKGRILYAISTW 487
*********889************************* PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 498 aa
Download sequence Send
to blast |
DKLVIDLDPP EDAKRFVLPT ENKFAAAGFN GSAPVAAAVA VKEEVVAVAA PDAVPGGGGG 60
VGGRGRKNRF YDDEEDLEMD RRSSKQSALQ GDGDDRDVFD KYMITSHEMC VEQMEKLRIA 120
MQEEAAKKEA VNGNGKAKAK GGGRRGGREV VDLRTLLIHC AQAVASDDRR NATELLKQIK 180
QHASPQGDAT QRLAHCFAEG LQARLAGTGS MVYQSLMAKR TSAVDILQAY QLYMAAICFK 240
KVVFIFSNQT IYNASLGKKK IHIPGFRPTQ RIEETGRRLS KYAQEFGVPF KYQVIAASKM 300
ETIRAEDLNL DPEEVLIVNC LYQFKNLMDE SVLIESPRDI VLNNIRKMRP HAFIHAIVNG 360
SFSAPFFVTR FREALFYYSA LFDVLDTTTP RDSNQRMLIE QNIFGRAALN VIACEGTDRV 420
ERPETYKQWQ VRNQRAGLKQ LPLNPDVVQV VRDKVDGCYH KDFVIDIDHN WLLQGWKGRI 480
LYAISTWVAN DDAGSYF*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035641 | 0.0 | BT035641.1 Zea mays full-length cDNA clone ZM_BFb0073P23 mRNA, complete cds. |
| GenBank | BT036617 | 0.0 | BT036617.1 Zea mays full-length cDNA clone ZM_BFb0126F15 mRNA, complete cds. |
