PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G307200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 1037aa    MW: 114194 Da    PI: 8.3565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G307200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017917940122
                         EEET..TTTEEESSHHHHHHHHHH CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                         ++C    C++sFs++ +L  H r 
  Seita.3G307200.1.p 917 FSCDieGCDMSFSTQQDLALHKRD 940
                         899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.7E-171758IPR003349JmjN domain
PROSITE profilePS5118313.8831859IPR003349JmjN domain
PfamPF023759.4E-141952IPR003349JmjN domain
SuperFamilySSF511978.24E-25116355No hitNo description
SMARTSM005583.8E-46189358IPR003347JmjC domain
PROSITE profilePS5118435.369189358IPR003347JmjC domain
PfamPF023732.6E-36222341IPR003347JmjC domain
SMARTSM003559.7917939IPR015880Zinc finger, C2H2-like
SMARTSM0035515940964IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887940969IPR007087Zinc finger, C2H2
PROSITE patternPS000280942964IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-9956998No hitNo description
Gene3DG3DSA:3.30.160.601.5E-9967994IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002970994IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.344970999IPR007087Zinc finger, C2H2
PROSITE patternPS000280972994IPR007087Zinc finger, C2H2
SuperFamilySSF576673.91E-89881022No hitNo description
Gene3DG3DSA:3.30.160.602.6E-99951023IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.110001026IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.28410001031IPR007087Zinc finger, C2H2
PROSITE patternPS00028010021026IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MSPPAVETPE WLRNLPVAPE YHPTAAEFVD PIAYILKIEA EASRYGICKI VPPLAPPPRE  60
ATVERLKASF AANAAAAAGV DGAAPAPTFP TRLQQVGFST KNRRPASRRV WESGERYTLE  120
AFRAKARDIE LPRHAVPPKH ATQLQLEALF WGACAARPFN VEYGNDMPGS GFAAPKEGGG  180
GNAALAARDV GETEWNMRLA PRARGSLLRA MGRDVAGVTT PMLYVAMLYS WFAWHVEDHE  240
LHSLNYLHFG KPKTWYGVPR DAMLAFEDAV RVHGYADDLN AIMAFQTLNE KTTVLSPEVL  300
LSAGVPCCRL VQNPGEFIIT FPGAYHSGFS HGFNCGEATN IATPRWLQVA KEAAIRRAST  360
NCGPLVSHYQ LLYELALSLR PRELKDSHGV PRSSRLRDKK KNEGEIMIKE TFVGSVIENN  420
NFLSILLDKS SCVIIPEIKF PLPSFPTSMA PEVTVKQGLI AGTCSISQKK AEDMLAYGNA  480
IDEIKGFEKM SESQSSSATT SSACNGRKLY ETKFGMVNSS ALLLNSEIQS GVIEKGGSHQ  540
GCGLLDQGRL PCVQCGILSY ACVAIIQPKE AAVQYVISQE CMSSSAKHGE IMKSNDTSNW  600
ITTVPPQGHS SETDDNRIHN MSSARVSDRC RQLYTSSTHG CASALGLLAS AYESSDSDEE  660
AEAPDNISNN SANNDAVNGI TNIQSSGTSV QYQNTNLHLY EEGCDSRATV SPMKPVENMS  720
IAMTQASIET DMTHLADLGE SLTAYDQCKK KSSKCKASDD LSNVEKRLQK MVKKVSTKKH  780
KNDKTNRQFQ EKHSKDNNVD LLHEDNGDEA TQENWDGVQQ KTNDVKVKSR GKMHSGKKKA  840
SKCQTSDGLH NGDNEAKFSC DTDVCHRDKA TIDKWEEIPK EKADDVKVKS KMQSGKKKAS  900
KHPASDGLRN GDKGAKFSCD IEGCDMSFST QQDLALHKRD ICPVKGCKKK FFCHKYLLQH  960
RKVHLDERPL MCSFTGCKKT FKWPWARTEH MRVHTGVRPY ACTEPGCTQT FRFVSDFSRH  1020
KRKTGHSCDK KKKNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-69103797353Transcription factor jumonji (Jmj) family protein
6ip4_A4e-69103797353Arabidopsis JMJ13
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G307200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681017.10.0lysine-specific demethylase REF6, partial
TrEMBLA0A368QKL20.0A0A368QKL2_SETIT; Uncharacterized protein
STRINGSi021414m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-162relative of early flowering 6