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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Seita.3G307200.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 1037aa MW: 114194 Da PI: 8.3565 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.8 | 0.00017 | 917 | 940 | 1 | 22 |
EEET..TTTEEESSHHHHHHHHHH CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22
++C C++sFs++ +L H r
Seita.3G307200.1.p 917 FSCDieGCDMSFSTQQDLALHKRD 940
899999***************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00545 | 2.7E-17 | 17 | 58 | IPR003349 | JmjN domain |
| PROSITE profile | PS51183 | 13.883 | 18 | 59 | IPR003349 | JmjN domain |
| Pfam | PF02375 | 9.4E-14 | 19 | 52 | IPR003349 | JmjN domain |
| SuperFamily | SSF51197 | 8.24E-25 | 116 | 355 | No hit | No description |
| SMART | SM00558 | 3.8E-46 | 189 | 358 | IPR003347 | JmjC domain |
| PROSITE profile | PS51184 | 35.369 | 189 | 358 | IPR003347 | JmjC domain |
| Pfam | PF02373 | 2.6E-36 | 222 | 341 | IPR003347 | JmjC domain |
| SMART | SM00355 | 9.7 | 917 | 939 | IPR015880 | Zinc finger, C2H2-like |
| SMART | SM00355 | 15 | 940 | 964 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.887 | 940 | 969 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 942 | 964 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.65E-9 | 956 | 998 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.5E-9 | 967 | 994 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.002 | 970 | 994 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.344 | 970 | 999 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 972 | 994 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.91E-8 | 988 | 1022 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.6E-9 | 995 | 1023 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 1.1 | 1000 | 1026 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.284 | 1000 | 1031 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 1002 | 1026 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1037 aa Download sequence Send to blast |
MSPPAVETPE WLRNLPVAPE YHPTAAEFVD PIAYILKIEA EASRYGICKI VPPLAPPPRE 60 ATVERLKASF AANAAAAAGV DGAAPAPTFP TRLQQVGFST KNRRPASRRV WESGERYTLE 120 AFRAKARDIE LPRHAVPPKH ATQLQLEALF WGACAARPFN VEYGNDMPGS GFAAPKEGGG 180 GNAALAARDV GETEWNMRLA PRARGSLLRA MGRDVAGVTT PMLYVAMLYS WFAWHVEDHE 240 LHSLNYLHFG KPKTWYGVPR DAMLAFEDAV RVHGYADDLN AIMAFQTLNE KTTVLSPEVL 300 LSAGVPCCRL VQNPGEFIIT FPGAYHSGFS HGFNCGEATN IATPRWLQVA KEAAIRRAST 360 NCGPLVSHYQ LLYELALSLR PRELKDSHGV PRSSRLRDKK KNEGEIMIKE TFVGSVIENN 420 NFLSILLDKS SCVIIPEIKF PLPSFPTSMA PEVTVKQGLI AGTCSISQKK AEDMLAYGNA 480 IDEIKGFEKM SESQSSSATT SSACNGRKLY ETKFGMVNSS ALLLNSEIQS GVIEKGGSHQ 540 GCGLLDQGRL PCVQCGILSY ACVAIIQPKE AAVQYVISQE CMSSSAKHGE IMKSNDTSNW 600 ITTVPPQGHS SETDDNRIHN MSSARVSDRC RQLYTSSTHG CASALGLLAS AYESSDSDEE 660 AEAPDNISNN SANNDAVNGI TNIQSSGTSV QYQNTNLHLY EEGCDSRATV SPMKPVENMS 720 IAMTQASIET DMTHLADLGE SLTAYDQCKK KSSKCKASDD LSNVEKRLQK MVKKVSTKKH 780 KNDKTNRQFQ EKHSKDNNVD LLHEDNGDEA TQENWDGVQQ KTNDVKVKSR GKMHSGKKKA 840 SKCQTSDGLH NGDNEAKFSC DTDVCHRDKA TIDKWEEIPK EKADDVKVKS KMQSGKKKAS 900 KHPASDGLRN GDKGAKFSCD IEGCDMSFST QQDLALHKRD ICPVKGCKKK FFCHKYLLQH 960 RKVHLDERPL MCSFTGCKKT FKWPWARTEH MRVHTGVRPY ACTEPGCTQT FRFVSDFSRH 1020 KRKTGHSCDK KKKNST* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6ip0_A | 4e-69 | 10 | 379 | 7 | 353 | Transcription factor jumonji (Jmj) family protein |
| 6ip4_A | 4e-69 | 10 | 379 | 7 | 353 | Arabidopsis JMJ13 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Seita.3G307200.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_022681017.1 | 0.0 | lysine-specific demethylase REF6, partial | ||||
| TrEMBL | A0A368QKL2 | 0.0 | A0A368QKL2_SETIT; Uncharacterized protein | ||||
| STRING | Si021414m | 0.0 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP6718 | 30 | 35 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G48430.1 | 1e-162 | relative of early flowering 6 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Seita.3G307200.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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