PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G304700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 237aa MW: 24833.9 Da PI: 7.9727 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.7 | 4e-13 | 63 | 87 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G++CkF+H+p Seita.3G304700.1.p 63 EPDCSYYMRTGLCRFGATCKFNHPP 87 789********************97 PP | |||||||
2 | zf-CCCH | 28.7 | 2.3e-09 | 153 | 173 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f++r+G+Ck+G++CkF H++ Seita.3G304700.1.p 153 HFYSRYGICKFGPNCKFDHPM 173 59*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.948 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 66 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.516 | 145 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0052 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-7 | 153 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAAAGAGAGG GGGTGGGEGS SSSPAGVAIG PHHHGSAEEA MWQMTLGGGE SMEHGPFPER 60 IGEPDCSYYM RTGLCRFGAT CKFNHPPNRK LAVAAARMKG EYPYRVGQPE CQAGRQAFCL 120 ISLLSPQKTA LNCGLYMLTT FAFLLLTGRT CLHFYSRYGI CKFGPNCKFD HPMGTLMYGT 180 STSPTGDAPT MHYQLASSPG HSERLLDGGS GRSHRISQSD SQQIPSGNGS TEREAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G304700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q2QT65 | 1e-54 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A368QL76 | 1e-172 | A0A368QL76_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J35669.1.p | 4e-61 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 3e-41 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G304700.1.p |
Publications ? help Back to Top | |||
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