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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G281000.2.p | ||||||||
Common Name | LOC101773766, SETIT_022619mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 36321.3 Da PI: 5.16 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 82 | 133 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++ge Seita.3G281000.2.p 82 CGYRGVRQRT-WGKWVAEIREP---N-RaNRLWLGTFPTAEDAARAYDQAARAMYGE 133 79*****999.**********8...3.469************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-14 | 82 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.63E-30 | 82 | 140 | No hit | No description |
SMART | SM00380 | 5.0E-33 | 83 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 83 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 83 | 141 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-32 | 84 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MTVDQKQAMP MQAQAMQPGR KKRPRRLRDG PTSVAAVIQR WAEHNKQLEH DSEGAKRPRK 60 APAKGSKKGC MKGKGGPENT HCGYRGVRQR TWGKWVAEIR EPNRANRLWL GTFPTAEDAA 120 RAYDQAARAM YGEVARTNFP RQNAVASSQV AWAATPAQVA PSVVEGVVHS TSCESTTTSN 180 HSDIASTLHK PEVSDLSSSV KVECPEVVEA GSRRSEMVSG TSHQHEDSHP STQASTPNVG 240 DKEVFEPLEP IANLPEGDFD GFDIDEMLRM MEADPQNEGG AGAGMEQPFY FDGLDSSLLE 300 SMLQSEPEPY SLSEEQDMFL AGFESPGFFE GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 81 | 147 | 12 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 26 | GRKKRPRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G281000.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ227697 | 0.0 | DQ227697.1 Pennisetum glaucum transcription factor DREB2A gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962409.1 | 0.0 | dehydration-responsive element-binding protein 2B isoform X2 | ||||
Swissprot | Q5W6R4 | 3e-92 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | K3Z7V1 | 0.0 | K3Z7V1_SETIT; Uncharacterized protein | ||||
STRING | Si022619m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 2e-36 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G281000.2.p |
Entrez Gene | 101773766 |
Publications ? help Back to Top | |||
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