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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.3G280400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
M-type_MADS |
Protein Properties |
Length: 196aa MW: 21217.4 Da PI: 10.9132 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.3G280400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 65.3 | 6.4e-21 | 22 | 66 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
ie+ +r vtfskR+ g+lKKA+ELS LC+a+va i+fs+ gk +
Seita.3G280400.1.p 22 IEDPARRMVTFSKRKSGLLKKASELSLLCGARVAAIVFSQAGKPF 66
999**************************************9865 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MVAPRGTGRT SQGRRRIEIA YIEDPARRMV TFSKRKSGLL KKASELSLLC GARVAAIVFS 60 QAGKPFAFGS PSVDHVLRLC APLPAGDKDE DSLGIGFTGD AIGGGDREVV EATARRKEAA 120 TARVAEEAAR MSYIGKKVLR AAAGRFWWEA DVEALGAEEL REFARALRRL RDNVRRRADK 180 LPLAPVSQPT TTLLQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_A | 3e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-16 | 13 | 77 | 1 | 65 | Myocyte-specific enhancer factor 2A |
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