PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G269200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 496aa    MW: 53686.4 Da    PI: 10.6838
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G269200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.61e-29246343297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         +++r+ws eDei++L +l++++ak+g+   + +d+ ++++++++++ +++s++ql++K+rrLK+K+k   ++a++g++p++ ++h+++++e
  Seita.3G269200.1.p 246 RPSRVWSPEDEITILSALVEYRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHEHDVYE 336
                         678************************777888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         lskk+Wg
  Seita.3G269200.1.p 337 LSKKVWG 343
                         ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-28248343IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
SIEGRKRRGC RLSTHSDASD GGAGDVRYSR RRRRRNSPSP IPSRSPSRSR SRSRSKTPPP  60
NLRPNAAALS STPTSAGADF AAASDSDADA GGGRGRVSSP RRRDRKGAPR DRLDSDADAD  120
ASAGGRAPSP RRRRKRSPSF HFDSDADAGG RVPSPRRNRE RTPRLHSDSD SDNSAAAAGS  180
EDDGAGAGDA SSLPRARRSS RIETSNIKPV STRPMEAPRR TPAGSSQRRS KRRHSSRRAS  240
PEHQKRPSRV WSPEDEITIL SALVEYRAKK GQLPASIQDT GKVHSQISGQ LTANASTTQL  300
SDKVRRLKHK YKLLFTRARN GRDPDLPTQH EHDVYELSKK VWGFKSGDIL GGSHAYEDTG  360
DAESNEEQEI EESDDAMENG WEHHERPSKK PKAFRFENGN GNALAAVGRA SHGNGSGRDD  420
AEKGKQMYPY LWEAVAELSK EHPSGPIFRK AFGVLEKSKA QATSYGGEAA EVQNVRDKAA  480
AASDGPDEGD NADGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311GRKRRGCRL
22634RYSRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G269200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702606.10.0STOREKEEPER protein
TrEMBLA0A368QJY90.0A0A368QJY9_SETIT; Uncharacterized protein (Fragment)
STRINGSi013598m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-13DNA-binding storekeeper protein-related transcriptional regulator