PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G257700.1.p
Common NameSETIT_021952mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 471aa    MW: 51375.1 Da    PI: 9.7446
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-17130189155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Seita.3G257700.1.p 130 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 189
                         57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-12130189IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-17130199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-15131198IPR001471AP2/ERF domain
SMARTSM003806.2E-25131203IPR001471AP2/ERF domain
PROSITE profilePS5103219.836131197IPR001471AP2/ERF domain
PRINTSPR003675.3E-5132143IPR001471AP2/ERF domain
PRINTSPR003675.3E-5179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MPPPSPPPPP ISNPTTTPRR PQTVTRYASL RCAVQHRTNP SPSSRLGTAP TDLSGRRRAA  60
MASPNPDAAG LAVPGAGEGS SSSFGAVAGA IVAAGEQPPR RALTVRKERV CTAKERISRM  120
PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY  180
DLAALKYWGA GTQINFPVSD YARDLEEMQM ISKEDYLVSL RRKSSAFSRG LPKYRGLPRQ  240
LHNSRWDTSL GHLLGNDYMN LSCGKDIMLD GKFAGSFGLE RKLDLTNYIR WWLPKKTRQS  300
DTSKAEEIAD EVRAIESSMQ QTEPYKLPSL GLCSPSKPSS MGLSACGILS QSDAFKSFLE  360
KSTKSSEECT LSKEIVEGKA VGSVPATGHD TAAVNINMNE LLVQRATYSM APVMPTPMKS  420
TWSPADPSAD PLFWSNFVLP SSQPVTMATI TTATFAKNEV SSSDPFQSQE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G257700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962201.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-105AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3Z5Y40.0K3Z5Y4_SETIT; Uncharacterized protein
STRINGSi021952m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-103AP2 family protein