PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G246000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 860aa    MW: 94203.2 Da    PI: 5.3349
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G246000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.23e-35178252276
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Seita.3G246000.1.p 178 CQVPGCEADIRELKGYHRRHRVCLRCAHASAVILDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 252
                         ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-26174239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.598175252IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-33176255IPR004333Transcription factor, SBP-box
PfamPF031107.6E-27178252IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MDAADSGGGG AADAGEPIWD WGNLLDFVVD GDDSLVLPWD DDAAGIGAAD PTEAAAPPLP  60
APMPQPVEVE AEPEPEPEAE AGPVLPPPPL RVQGIGRRVR KRDPRLVCPN YLAGMVPCAC  120
PEVDEMVAAA EVEDVAAEFL AGARKKTKTA ARRGKAGAAG VGGVAGGTAR AAAMEMKCQV  180
PGCEADIREL KGYHRRHRVC LRCAHASAVI LDGVQKRYCQ QCGKFHVLLD FDEDKRSCRR  240
KLERHNKRRR RKPDSKGLLD KEIDEQLDLS ADVSADGELR EENMEGTTSE MLETVLSNKV  300
LDRGTPAGSE DVLSSPTCTQ PSLQTEQSKS VVTFAASVEA CVGAKQENAK LTTNSPIHDT  360
KSAYSSSCPT GRISFKLYDW NPAEFPRRLR HQIFEWLASM PVELEGYIRP GCTILTVFVA  420
MPQHMWDKLS DDAANLLRNL VNSPNSLLLG KGAFFIHVNN MIFQVLKDGA TLMGTRLDVQ  480
SPRIDYVYPT WFEAGKPVEL ILCGSSLDQP KFRSLLSFDG DYLKHDCYRL KSLDTFNCID  540
NGDLIVDSQH EIFRINITQS RPDIHGPAFV EVENMFGLSN FVPILFGSKQ LCSELERIQD  600
ALSGSSDSSL FGELPGAPCD PCERRKLQMA AMSGFLTDIG WLIRKPAPDE FKNVLSSTNI  660
QRWVCILKFL IRNDFMNVLE IIVKSMDNIM GSEVLSNLEK GRLEDHVTAF LGYVSHARNI  720
IDCRANNDKE TQLETRLISI DSPNQRSLGT SVPLANENAG AGGDNNMHSA NAAYEEENVP  780
LVTRDVSHRY CCQPDMNARW LNPSLVVKYP GGATRMRLGM TLVIATVLCF TACLVLFHPH  840
GVGVLASPVK RYLSSDSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A9e-38177257585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234252KRSCRRKLERHNKRRRRKP
2238250RRKLERHNKRRRR
3245252NKRRRRKP
4246251KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G246000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962114.10.0squamosa promoter-binding-like protein 9 isoform X1
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A368QIY20.0A0A368QIY2_SETIT; Uncharacterized protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-136squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]