PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.3G242400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 324aa MW: 32176.7 Da PI: 7.6944 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.9e-30 | 100 | 153 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Seita.3G242400.1.p 100 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 153 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-20 | 97 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 97 | 156 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 99 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 101 | 153 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 103 | 152 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MREEEPSWFA RCEEQLPRPD ELMPLSQTLI TPDLAVAFDI PTHGGGGAGG GAGGGGGAGG 60 SGGGGAGGPD MNGGGASSAA GSSGGGGGGA GDEPARTLKR PRLVWTPQLH KRFVDAVAHL 120 GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG LGGGGGGGGG GGGGAGGSHS 180 SGSGTDAATE HLFATGPVPF LPPGHRAPAG ADQYSPFAPM GATHHHHHHQ HAPQIGHFQH 240 PAARPLGPYG AAGASFDHSF FSRAGAPPVG PPGMHHHRMV GAGAGMGMMA PAPFGDEMDL 300 GSRGGGGGSG RRELTLFPTS GDH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 9e-34 | 100 | 156 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.3G242400.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962090.1 | 0.0 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 2e-58 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A368QII6 | 0.0 | A0A368QII6_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G471600_P01 | 1e-126 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10760.1 | 3e-52 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.3G242400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|