 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.3G225400.1.p |
| Common Name | LOC101784553, SETIT_022966mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 267aa MW: 29271.3 Da PI: 4.9699 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G225400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 131.1 | 8.1e-41 | 5 | 136 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
l+pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d++ ++Pw+Lp+ +++++ + w++F++r++++a+g r++r+t sgyWka
Seita.3G225400.1.p 5 LAPGFRFYPTEEELLCFYLRNKLDGVRsGDIERVIPVADVCALDPWQLPEayrgEFSGNGEPWFYFCPRQEREARGGRPSRTTPSGYWKAA 95
579*********************9986677788***************6456655568889***************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
g+ v++++g+ +g+kkt+vfy+grap g kt+W ++ey+
Seita.3G225400.1.p 96 GTPGLVYAADGRPIGTKKTMVFYRGRAPAGAKTEWKLNEYK 136
****************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MTDQLAPGFR FYPTEEELLC FYLRNKLDGV RSGDIERVIP VADVCALDPW QLPEAYRGEF 60
SGNGEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120
RAPAGAKTEW KLNEYKSLEE EDEYAAAAHA AVPAPSFALQ TRSEFTLCRL YTKSGCPRQF 180
DRRPGAAAAA GGGSENPAAA ALANGEETGR KRRRAAPSED TSSSDGGGDP STQQRLRQRG 240
ADEGPNDDMV NLSELLDYWF DTENSF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-30 | 5 | 173 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 7e-30 | 5 | 173 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 7e-30 | 5 | 173 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 208 | 214 | GRKRRRA |
| 2 | 209 | 213 | RKRRR |
