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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.3G223400.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB |
| Protein Properties |
Length: 167aa MW: 18848.8 Da PI: 10.9769 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G223400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 42.1 | 2e-13 | 76 | 118 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
T +Ed l + vk+lG + W+ Ia+ ++ R +kqc++rw+++l
Seita.3G223400.1.p 76 TLDEDRSLEKHVKKLGEKKWSMIAKNLP-DRIGKQCRERWLNHL 118
789*************************.*************97 PP
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| 2 | Myb_DNA-binding | 32.4 | 2.1e-10 | 126 | 157 | 3 | 36 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
+WT+ E++ +v +++++G++ W++ a++++ gR
Seita.3G223400.1.p 126 AWTEKEEKVIVALHRKHGNK-WAKMAKRIP-GRP 157
8*******************.*********.996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 167 aa
Download sequence Send
to blast |
MSILLGKTMS RKMARFRNKM LPIFRVPAAD GGLGYGGAIC GNHALLGNTV PSENTLVSQV 60
NAEEDARTYN QRGQRTLDED RSLEKHVKKL GEKKWSMIAK NLPDRIGKQC RERWLNHLSP 120
DIKTTAWTEK EEKVIVALHR KHGNKWAKMA KRIPGRPESN FSRSSK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
