PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G189000.1.p
Common NameLOC101786946, SETIT_022548mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 346aa    MW: 37102.3 Da    PI: 6.5828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G189000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-052322691254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Seita.3G189000.1.p 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 269
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.049220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11230287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.09E-6230274No hitNo description
SMARTSM003530.0067231275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-9234278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MADEWWSSVR AGDGASACST DQDAAEPGAT SATSTDYFRS GLHVDAAASP PSSFLADPPH  60
MADWTQAYVG GGRAAAEATA SFNALLRLHG DDAGRHFLLD QQPDVVDGAA PLAPEAAASR  120
SASLCAENQY SGYGDVPAAP MTTTKPFSQQ HFVSGFFASS TRNFSDVASE PRPMTTKPLL  180
LQALEQKAFR SHKEHVQDAC YSATRRSVPD SPAAAKKLRI ATPSPMPTFK VRKEKLGDRI  240
TALQQLVSPF GKTDTASVLH EAIEYIRFLH DQVASLSSPY LRCGRPVQVQ QLQQQQVSYH  300
AKDGGEAKED LRSRGLCLVP VASTYAVASE TAPEFWHPNF GGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G189000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695462e-87BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961600.10.0transcription factor bHLH112
SwissprotQ94JL32e-47BH112_ARATH; Transcription factor bHLH112
TrEMBLK3Z7M80.0K3Z7M8_SETIT; Uncharacterized protein
STRINGSi022548m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.14e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]