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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.3G181900.1.p |
Common Name | LOC101757931, SETIT_022833mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
TCP |
Protein Properties |
Length: 295aa MW: 30831.7 Da PI: 8.7343 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.3G181900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 95 | 1.5e-29 | 58 | 157 | 3 | 99 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaa 91
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ + + ss +a + + g a
Seita.3G181900.1.p 58 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPHAQDlvAHLPSSMMAPFANGGGAD 148
78*************************************************************9999933334444444444444444333 PP
TCP 92 ksaa.kskk 99
+++a +
Seita.3G181900.1.p 149 RASAaANAT 157
333323333 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MISGNLTNEE LAASRCTKAE GPAAGAVAVA AKSPAVPSSR HWPPSTESRI VRVSRVFGGK 60 DRHSKVRTVK GLRDRRVRLS VPTAIQLYDL QDRLGLSQPS KVVDWLLDAA QHEIDKLPPL 120 QFPPHAQDLV AHLPSSMMAP FANGGGADRA SAAANATTGA ASAAMVDGDK RHCHGAGIKG 180 LMGLNNPVGL VNGAMPLAHG LYYTAGEPWA NGNSVHDQVS HHGTSPQTVA HHSPFSSLLS 240 LAPGPQLVFY SPEGGGFAMK EAADHQFPVD NLDHSQGQLS LSSARSFLHP GSQG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |