PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G143400.1.p
Common NameLOC101760947, SETIT_024078mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 487aa    MW: 50452.5 Da    PI: 7.1263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31236294259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Seita.3G143400.1.p 236 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGSHNHP 294
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-34220296IPR003657WRKY domain
SuperFamilySSF1182904.71E-28228296IPR003657WRKY domain
PROSITE profilePS5081130.561230296IPR003657WRKY domain
SMARTSM007742.1E-37235295IPR003657WRKY domain
PfamPF031061.2E-26237294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGLHVGRRKS GSEDSIVDDG VSSNEVDHRE TKAELALAKS EIGRLNEENK QLKNMLGRVT  60
TSYNSLQVQV LTLMQQRNNH RSLGAPSHEL NVDPENKDQD GSLLPRQFIS LGTAALPDEP  120
PLRSAGGECS ASPSNTDAAM PTPPDYFPGK GNGVVLGSKD VMPLPTFDHH HRAQEREQGG  180
SSPEDPPPPH HVSQGWLPSK VPKFLPAKGS EPVPEAATMR KARVSVRARS EAAMISDGCQ  240
WRKYGQKMAK GNPCPRAYYR CTMAAGCPVR KQVQRCAEDT TVVITTYEGS HNHPLPPAAM  300
PMATTTAAAA AMLLSGSMPS ADGSLMAGSN FLARAVLPCS SNVATISASA PFPTVTLDLT  360
QPGPGAQSQQ QPQQPARPDP AQLQAALAEA ARPVALPQLF GQKLYDPSKH SAVQAAAAPD  420
AGDTVSAAAV IASDPNFPAV LAAAIKSYIG GSSGGGGGGA GGSSGTVPPP PASGGGDSSR  480
DDKIGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22226296877Probable WRKY transcription factor 4
2lex_A1e-22226296877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-137AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-137AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963595.10.0WRKY transcription factor 42
TrEMBLK3ZC050.0K3ZC05_SETIT; Uncharacterized protein
STRINGSi024078m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-77WRKY family protein