![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.3G143100.1.p | ||||||||
Common Name | LOC101761991, SETIT_024486mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9885.97 Da PI: 5.8773 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 14 | 60 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ E + + +a + +G g W+++++ mg ++++++++++ + Seita.3G143100.1.p 14 EWSRKENKMFEEALAYYGEGtpnLWDKVSSAMGGIKSAEEVRLHYED 60 7********************************778*********76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.876 | 7 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.3E-5 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.57E-11 | 13 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00374 | 19 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 88 aa Download sequence Send to blast |
MSGSRSSSPN SNSEWSRKEN KMFEEALAYY GEGTPNLWDK VSSAMGGIKS AEEVRLHYED 60 LVDDVKMIES GRVPYPKYKT QGFWTRG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-21 | 6 | 82 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.3G143100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU955181 | 8e-90 | EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961187.1 | 6e-59 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 6e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | K3ZD53 | 1e-57 | K3ZD53_SETIT; Uncharacterized protein | ||||
STRING | Si024486m | 2e-58 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-22 | RAD-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.3G143100.1.p |
Entrez Gene | 101761991 |