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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.3G142100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB |
| Protein Properties |
Length: 256aa MW: 28814.7 Da PI: 10.9005 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G142100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd lv++++ +G g W+ ar g++Rt+k+c++rw++yl
Seita.3G142100.1.p 22 KGPWTVEEDHVLVNYIAAHGEGAWNNLARAAGLNRTGKSCRLRWLNYL 69
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T+eE+e++v++ +++G++ W++Ia++++ gRt++++k++w++
Seita.3G142100.1.p 75 RGNMTAEEQERIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 118
89********************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MQSAVDAVAG VEQVVPQPAV RKGPWTVEED HVLVNYIAAH GEGAWNNLAR AAGLNRTGKS 60
CRLRWLNYLR PDVRRGNMTA EEQERIVQLQ ARWGNKWSRI AKHLPGRTDN EVKNFWRTKI 120
QQKKHKNKEH SAIETIITVA GVCSGMACKD TPAITEDQGS SNYSGRTGVT QDYGIVRQQQ 180
PNISSAADYL SLRCAWRSHW RWRLGLRSGV PGRVGRELLG HRRRLWTTMQ SYQARTCSFA 240
RRGEGGFAVI RILAD*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120986 | 3e-33 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. |
| GenBank | AC120990 | 3e-33 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. |
| GenBank | AP014961 | 3e-33 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 3e-33 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
