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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G142000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 231aa MW: 26117.8 Da PI: 8.227 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.8 | 2.7e-11 | 85 | 171 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 fY +YA+ +GF v++ ++kk +r ++Cs+egk + k ++ + r++++ +++Cka+lk ++ + + +++ +l HnH Seita.3G142000.1.p 85 FYMRYAQLAGFGVKMCNKKKF-------SRVMRCSCEGKGDFYKGDEALRVRNKTTMKMKCKAHLKFTRVYdsegnEVDMIIENANLFHNH 168 9*************9987776.......8899*********9999999999****************998864332334567888899*** PP FAR1 88 ela 90 l Seita.3G142000.1.p 169 LLH 171 885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-7 | 85 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLESSSTRFR TPPTQIGCQQ GSNEDQTITT GRQGVVFLPP DTLNTNQMIA SEEEIPPQTH 60 NESMDPNMIP REGMSFHTEA EAKAFYMRYA QLAGFGVKMC NKKKFSRVMR CSCEGKGDFY 120 KGDEALRVRN KTTMKMKCKA HLKFTRVYDS EGNEVDMIIE NANLFHNHLL HTPLKTKKMR 180 SHKSTEPVLY QIIDELQEAG VSTQSIKNVL QNMHGGAELV PITSRDIENR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G142000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368QF34 | 1e-173 | A0A368QF34_SETIT; Uncharacterized protein | ||||
STRING | Si027404m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-11 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G142000.1.p |