PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G131100.1.p
Common NameLOC101757145, SETIT_022568mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 344aa    MW: 36510.4 Da    PI: 6.7493
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G131100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32190247259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk+vers++dp++v++tYeg+H+h+
  Seita.3G131100.1.p 190 EDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKRVERSHQDPSTVVTTYEGQHTHP 247
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-34174249IPR003657WRKY domain
SuperFamilySSF1182901.29E-28181249IPR003657WRKY domain
PROSITE profilePS5081130.251184249IPR003657WRKY domain
SMARTSM007743.7E-36189248IPR003657WRKY domain
PfamPF031066.4E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSDGAGAGGH GHGGLYGDPA AADHFTAFDH DDFFFQRTPY AGEGSGGGDG LTTPYSSITD  60
YLQGFLDPAG LAAHLDVPCR LGDDDAVKQE MEVRLIRHDG PAASAPVTPN SSSVLSSSSC  120
EAGGADEETQ RRCKNMLEGE EEEQEMDAEG SAADRNCKRS KAAEKKARGE KKPREPRVAF  180
MTKSEVDHLE DGYRWRKYGQ KAVKNSSYPR SYYRCTAARC GVKKRVERSH QDPSTVVTTY  240
EGQHTHPRPA SLLVRGGAGG GAYAAPPPQL GLGFRPDLRA MIDSYAHGTR MAPGSLLLPR  300
PAGLPSPAPG LLQEHRRSSS HLAAAYGGAV LDFVPSAMGD GHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26180250878Probable WRKY transcription factor 4
2lex_A2e-26180250878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G131100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586071e-125KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961086.10.0probable WRKY transcription factor 57
TrEMBLK3Z7P80.0K3Z7P8_SETIT; Uncharacterized protein
STRINGSi022568m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.17e-41WRKY DNA-binding protein 28