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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.3G120000.1.p |
| Common Name | LOC101785213, SETIT_022660mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
LBD |
| Protein Properties |
Length: 326aa MW: 33677.5 Da PI: 7.0135 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G120000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 95.2 | 7.2e-30 | 4 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalp.eeeredamsslvyeAearardPvyGavgvilklqq 85
+C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+l++a+p +e+r+++++sl+yeA+ r+ +PvyG+vg+++++++
Seita.3G120000.1.p 4 SCNGCRVLRKGCTEACTIRPCLqwikaPDAQANATVFLAKFYGRAGLLNLIDAAPgDEQRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNW 94
6*************************999*************************62566******************************** PP
DUF260 86 qleqlkaelallke 99
+l+q+++e++l ++
Seita.3G120000.1.p 95 HLCQAAVEAVLKGA 108
********998766 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MRLSCNGCRV LRKGCTEACT IRPCLQWIKA PDAQANATVF LAKFYGRAGL LNLIDAAPGD 60
EQRPAVFRSL LYEACGRIVN PVYGSVGLLW SGNWHLCQAA VEAVLKGAPI VQISAEDAAA 120
ASPAHLHKAA ACYDIRHVAA KAKPAPAASS PAAGAADAAA APASSCPPAD DAQSSKAGGG 180
SSLLHKVAKP GRTRFKRASS SSSSKRQAHS KPPSDTEDDG HHVHLTADHA PPSRASSDDD 240
THHQEVSAAS LDTDASHVSQ AEQATTVAGE EDQHQEQQQQ QPAGLDLTLG FGSFAPLAAA 300
RPPTPPTVAG WSAADEPGVV GFRFL*
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