PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G117500.1.p | ||||||||
Common Name | LOC101777405, SETIT_022778mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 32590.3 Da PI: 4.3082 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 279 | 301 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ + L+ H + H Seita.3G117500.1.p 279 PCKSCSKTFNSEMALQAHSKAkH 301 6*****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.034 | 278 | 304 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 280 | 301 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEFWGLEVKP GTTVKCEPGE GYILHLSQAA LGESKKSDNA LMYVKVDDQK LAIGTLSLDK 60 YPQIQFDLVF DKEFELSHTS KAASVFFSGY KVEQPGEGDE MDFDSEEDED EEEELENPVI 120 KANGKAGAKE DQKSQGKAGA AASKSSAAVK DVEMKSKDDD DSDEDETDDS DDDDLSAAEG 180 DDDDSSDEGD SSEDDEDSEE EEEETPTPKK PEGGKKRAAE NALKTPVSDK KAKVATPSGQ 240 KTGGKKGVTH VATPHPAKKT PANNDKSKEK SPKSGGSVPC KSCSKTFNSE MALQAHSKAK 300 HGAK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G117500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960961.1 | 0.0 | histone deacetylase HDT2 | ||||
Swissprot | Q9M4U5 | 1e-131 | HDT2_MAIZE; Histone deacetylase HDT2 | ||||
TrEMBL | K3Z8A8 | 0.0 | K3Z8A8_SETIT; Uncharacterized protein | ||||
STRING | Si022778m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2204 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 3e-29 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G117500.1.p |
Entrez Gene | 101777405 |